Retraction Note: Gene expression analysis in response to osmotic stimuli in the intervertebral disc with DNA microarray

نویسندگان

  • Wenzhi Zhang
  • Xu Li
  • Xifu Shang
  • Qichun Zhao
  • Yefeng Hu
  • Xiang Xu
  • Rui He
  • Liqun Duan
  • Feng Zhang
چکیده

BACKGROUND Intervertebral disc (IVD) cells experience a broad range of physicochemical stimuli under physiologic conditions, including alterations in their osmotic environment. At present, the molecular mechanisms underlying osmotic regulation in IVD cells are poorly understood. This study aims to screen genes affected by changes in osmotic pressure in cells of subjects aged 29 to 63 years old, with top-scoring pair (TSP) method. METHODS Gene expression data set GSE1648 was downloaded from Gene Expression Omnibus database, including four hyper-osmotic stimuli samples, four iso-osmotic stimuli samples, and three hypo-osmotic stimuli samples. A novel, simple method, referred to as the TSP, was used in this study. Through this method, there was no need to perform data normalization and transformation before data analysis. RESULTS A total of five pairs of genes ((CYP2A6, FNTB), (PRPF8, TARDBP), (RPS5, OAZ1), (SLC25A3, NPM1) and (CBX3, SRSF9)) were selected based on the TSP method. We inferred that all these genes might play important roles in response to osmotic stimuli and age in IVD cells. Additionally, hyper-osmotic and iso-osmotic stimuli conditions were adverse factors for IVD cells. CONCLUSIONS We anticipate that our results will provide new thoughts and methods for the study of IVD disease.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Osmolarity Regulates Gene Expression in Intervertebral Disc Cells Quantifiedwith High Density Oligonucleotide Array Technology

INTRODUCTION: Cells of the intervertebral disc respond to mechanical and biophysical stimuli in their environment, including deformations, hydrostatic and osmotic pressures [1]. Previous studies have shown that fibrochondrocytes of the disc respond to altered osmotic pressure with changes in post-translational biosynthesis of proteoglycans (i.e., S-incorporation) [2, 3], as well as changes in g...

متن کامل

Association of Rs1676486 genetic polymorphism and lumbar disc degeneration in Iranian population

Background: lumbar disc degeneration is a multifactorial degenerative disease which is affected by genetic inheritance and environmental factors. Type XI collagen is important for organization of the extracellular matrix and cartilage collagen construction. Rs1676486 is a SNP that causes the conversion of C-T, resulting in a change in the expression of the collagen 11 alpha chain. The T allele ...

متن کامل

Feature Selection and Classification of Microarray Gene Expression Data of Ovarian Carcinoma Patients using Weighted Voting Support Vector Machine

We can reach by DNA microarray gene expression to such wealth of information with thousands of variables (genes). Analysis of this information can show genetic reasons of disease and tumor differences. In this study we try to reduce high-dimensional data by statistical method to select valuable genes with high impact as biomarkers and then classify ovarian tumor based on gene expression data of...

متن کامل

Screening of genes related with intervertebral disc disease by dynamic differential interaction network analysis.

AIM Gene expression profiles for intervertebral disc (IVD) cells treated with different osmolarities were compared to identify key genes associated with intervertebral disc diseases. MATERIALS AND METHODS Microarray data was downloaded from Gene Expression Omnibus (GEO) database and pre-processed using package of R. Gene co-expression was determined with Pearson correlation coefficient. Inter...

متن کامل

Significant pathways response to osmotic stimuli in the intervertebral disc.

BACKGROUND The intervertebral disc (IVD) is a special tissue localized in the middle of vertebrae and it often experiences osmotic environment to accommodate applied mechanical forces. AIM Here we aim to confirm significant pathways associated with IVD osmotic regulation. MATERIALS AND METHODS Two different pathway analyses which are named component-based approach and protein-protein intera...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره 18  شماره 

صفحات  -

تاریخ انتشار 2013